Bio::NEXUS::WeightSet Bio::NEXUS::WeightSet is a Perl module that represents column weights in alignment ( for each character).
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Bio::NEXUS::WeightSet Tags

Perl module column column weights column alignment weights

Bio::NEXUS::WeightSet Description

Bio::NEXUS::WeightSet is a Perl module that represents column weights in alignment ( for each character). Bio::NEXUS::WeightSet is a Perl module that represents column weights in alignment ( for each character).SYNOPSISnew Bio::NEXUS::WeightSet($name, @weights, $iswt);A module representing column weights in alignment (for each character)METHODSnew Title : new Usage : $node = new Bio::NEXUS::WeightSet($name, @weights); Function: Creates a new Bio::NEXUS::WeightSet object Returns : Bio::NEXUS::WeightSet object Args : noneset_weights Title : set_weights Usage : $weight->set_weights(@weights); Function: stores it in the list weights Returns : none Args : list of weightsget_weights Title : get_weights Usage : @wts=@{$weightset->get_weights()}; Function: Returns the weights array Returns : reference to array containing weights Args : noneselect_weights Title : select_weights Usage : $set->select_weights($columns); Function: select a subset of characters Returns : new self with subset of weights Args : column numbersis_wt Title : is_wt Usage : croak unless $weight->is_wt(); Function: Returns if object has weights (1 yes, 0 no) Returns : weight existence (integer) Args : noneset_name Title : set_name Usage : $weight->set_name($name); Function: Sets the name of the weightset Returns : none Args : name (string)get_name Title : get_name Usage : $name=$weight->get_name(); Function: Returns the name of the weightset Returns : name (string) Args : noneequals Name : equals Usage : $set->equals($another); Function: compare if two WeightSet objects are equal Returns : boolean Args : an WeightSet object Requirements: · Perl

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