egor An easy to use program to calculate environment-specific amino acid substitution tables
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egor Description

An easy to use program to calculate environment-specific amino acid substitution tables egor (Esst -Environment-specific substitution table- GeneratOR) is an open source and easy to use Ruby based program for calculating environment-specific amino acid substitution tables.NOTE: egor is licensed and distributed under the terms of the MIT License. Here are some key features of "egor": · No more segmentation fault · Fast enough not to leave your place · Slow enough to check your emails or have some chats with your colleagues next you · Full smoothing supported · In theory, infinite number of environment features can be handled Requirements: · RubyGems What's New in This Release: · Added --heatmap option for heat map generation from substitution tables · Added --heatmap-format option for heat map figure format (PNG, GIF, JPG, BMP, and PDF) · Added --heatmap-stem option to set a file name of total heat maps figure when --heatmap 1 or 2 is set · Added --heatmap-columns option to set the number of tables in a row when --heatmap 1 or 2 is set · Added --heatmap-values option to print values in the cells of heat maps · Renamed --noround option to --noroundoff · 'simple_memoize' RubyGem package is no longer required

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