 | ClaMSClassify your sequences with this tool. |
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ClaMS Ranking & Summary
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- License:
- Freeware
- Publisher Name:
- The Regents of the University of California
- Operating Systems:
- Windows All
- File Size:
- 20.4 MB
ClaMS Tags
- classify file classify classification sequence movie sequences video sequences classify files classify font classify documents classify email classify virus classify data behavioral sequences classify microarray data analyze polypeptide sequences polypeptide sequences classify sequence metagenomic sequences analysis analyze metagenomic sequences sequences
ClaMS Description
ClaMS is a handy application specially designed to offer you a sequence composition-based classifier for metagenomic sequences. ClaMS works by capturing signatures of each sequence based on the sequence composition. Each sequence is modeled as a walk in a de Bruijn graph with underlying Markov chain properties. ClaMS captures stationary parameters of the underlying Markov chain as well as structural parameters of the underlying de Bruijn graph to form this signature. In practice, for each sequence to binned, such a signature is computed and matched to similar signatures computed for the training sets. The best match that also qualifies the normalized distance cut-off wins. In the case that the best match does not qualify this cut-off, the sequence remains un-binned.
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