UGENE A complex genome analysis suite
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UGENE Ranking & Summary

UGENE Tags

analyzer complex Genome Browser Annotate Genome Visualize Genome Genome search genome sequence find genome sequence analyze genome genome analysis genome analyzer view multiple genome multiple genome viewer search genome genome analysis suite multiple sequence alignment HMM virus genome comparison compare virus genome view genome sequence display genome sequence view genome data genome data viewer browse genome view genome close related genome genome language prokaryotic genome Arabidopsis genome analysis view Arabidopsis genome analyze Arabidopsis genome analyze bacterial genome Genome visualization Genome Viewer genome-wide association genome circular visualization complex experiments analysis compare genome sequence genome sequence UCSC genome browser track manage genome track genome track manager analyze human Genome Genome Calculator view genome file genome mapping genome map visualization genome hybridisation array display genome data human genome analysis human genome bacterial genome sequence Genome Explorer Quantitative Genome microbial genome genome comparison characterize genome genome characterization Genome Positioning System genome rate view bacterial genome bacterial genome visualization

UGENE Description

UGENE is a comprehensive genome analysis suite that features multiple sequence alignment and a complex HMM builder and search module. UGENE is a handy tool that also offers a visual and interactive genome browsing experience.Also available: Portable UGENE Main features: Multiple sequence alignment using MUSCLE 3 and MUSCLE 4; HMM profiles build and search, based on the source of HMMER 2 and HMMER 3; PCR Primers design using Primer 3; Protein secondary structure prediction using GOR IV and PSIPRED; Search for restriction enzymes and integration with REBASE; Extremely fast repeat finder; Search for transcription factor binding sites using SITECON; ORF finder; Complete Smith-Waterman algorithm implementation. Chromatograms visualization; 3D viewer for files in PDB and MMDB formats; Multiple sequence alignment editor; Easy to use workflow designer for custom computational workflows. Complete support of modern multicore processors and SSE instructions; Out of the box support of modern GPUs using NVIDIA CUDA and ATI Stream; Integrated solutions for Cell Broadband Engine; Private solutions for supercomputers and distributed computing.

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