YASARA A molecular graphics, modeling and simulation program.
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YASARA Tags

analyzer simulator molecular Molecular Simulator

YASARA Description

YASARA is the molecular simulation program that finally makes it really easy to answer your questions. With an intuitive user interface, photorealistic graphics and support for affordable shutter glasses, autostereoscopic displays and input devices, YASARA creates a new level of interaction with the 'artificial reality', that allows you to focus on your goal and forget about the details of the program. YASARA is powered by PVL (Portable Vector Language), a new development framework that provides performance way above traditional software . PVL allows you to visualize even the largest proteins and enables true interactive real-time simulations with highly accurate force fields on standard PCs (see benchmarks). You can push and pull molecules around and work with dynamic models instead of static pictures. Main features: Molecular graphics with GPU shaders and tessellation Molecular movies and eLearning Molecular dynamics with 4 clicks Interactive real-time surfaces New force fields: YASARA, YAMBER , NOVA pH dependent typing of organic molecules Fastest molecular dynamics algorithms, see benchmarks MD simulation of membrane proteins with 4 clicks Automatic force field parameter assignment for 98% of the PDB Yanaconda macros and Python scripts Homology modeling with 4 clicks and CASP approval Small-molecule docking with 4 clicks Loop modeling Side-chain prediction pH dependent hydrogen bonding networks Structure validation including ligands NMR structure determination with 4 clicks Multi-dimensional knowledge-based potentials

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