jPHYDIT Phylogenetic Editor for JAVA
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editor phylogenetic analysis RNA sequence molecular sequence

jPHYDIT Description

The jPHYDIT program is a molecular sequence editor specially designed for phylogenetic analysis such as ribosomal RNA sequences. jPHYDIT displays secondary/tertiary structure pairings of ribosomal RNA molecules whiling users edit nucleotide sequences. This process allows users to do "alignment based on rRNA secondary structure" which is required for the precise phylogenetic inference. Get jPHYDIT and give it a try to see what it's all about! Main features: Molecular sequence editor Semiautomated pairwsie alignment Manual editing of aligned sequences with RNA secondary structure information Various phylogenetic treeing algorithms Server-Client-based database management system (For MySQL)

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