AsymmetryCounter Count number of substitutions in each direction for amino acids pairs.
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AsymmetryCounter Tags

Analyze Counter Count acids arbitrary direction find amino acid amino acid finder search amino acid Amino Acid analyzer amino acid sequence amino acid amino acid translator extract amino acid amino acid residue optimal amino acid analyze amino acid count substitutions number analyze amino acids pair amino acids pair analysis analyze amino acid sequence amino acid classification Amino Acid Topology amino-acid detector detect amino-acid analyze polyprotic acids analyze amino acid chain kerning pairs

AsymmetryCounter Description

AsymmetryCounter is a small, command prompt based specially designed to take the file of aligned sequences produced by AmbiguityRemover and counts, for each pair of amino acids, the number of substitutions in each direction. It compares the ratio of substitutions in one direction and substitutions in the opposite direction to the expected 1:1 ratio using a goodness-of-fit test. If a pair of amino acids has less than 50 total substitutions, the exact binomial test is used and the P-value is reported; if there are 50 or more substitutions, the G-test of goodness-of-fit is used and the G-value and P-value are reported. If the G-value is greater than 454, the P-value is given as "

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