Viral Genome Organizer Genome browser to use via Java
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Viral Genome Organizer Description

Viral Genome Organizer or VGO created in order to be an easy-to-use Java-based genome browser. It can be used to display information about a genome, including its genes, ORFs and start/stop codons. It can also be used to perform a regular expression search, a fuzzy motif search, and a masslist search. Because VGO talks to our database of genome sequences (VOCs) it can be used to compare genomes. Main features: view genes and predicted ORFs in one or a series of genomes. display start and stop codons within the sequence search for sequences within genomes using regular expressions; e.g GGATCC or TTTTTT using a fuzzy search pattern; e.g. GGATCC allowing one mismatch for genes with the highest AT composition use a GUI to select and extract regions of a genome display orthologs in a set of genomes by using the GUI to select a gene in another genome display a plot of nucleotide composition. search for the longest oligonucleotide shared between a series of unaligned genomes search the translated genome for matches to mass spec peptides graphically display data from other programs on top of the genome display

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