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Path-O-Gen
A tool for investigating the temporal signal and 'clocklikeness' of molecular phylogenies...
NINJA
Compute neighbor-joining phylogenies...
alignment inference phylogeny inference phylogeny phylogeny analyzer
PPH
A program for inferring haplotypes from genotypes...
analysis haplotype extended haplotypes haplotype analysis generate interacting genotypes
MrBayes
A tool to help you with your Bayesian estimation of phylogeny....
analyzer analysis Cost Estimation Bayesian estimation Bayesian
RevBayes
Perform evolution analysis based on the Bayesian inference method...
codonPhyML
Analyze and learn phylogenetic tree of various species....
sequence phylogenetic tree viewer Codon sequence analyzer phylogenetic tree analyzer
Component
A tool for comparing cladograms for use in phylogeny and biogeography studies...
BayesTraits
A program designed to display, analyze and manipulate samples of trees, in particular Bayesian samples...
RESTSITE
A set of programs for analyzing restriction site or fragment data...
TreeView
Tree data visualizer for any data structure...
DNAdistree
A software for distance-based phylogeny inference from DNA sequences....
MetaPIGA
Maximum likelihood large phylogeny estimation....
FastME
Phylogeny reconstruction made easy....
Analyze reconstruct File reconstruction Packet Reconstruction Duplex Reconstruction
PAML
Phylogentic Analysis by Maximum Likelihood...
DNA protein sequence DNA analyzer analyze protein sequence phylogeny